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User-Level Workflow Design [electronic resource] : A Bioinformatics Perspective / by Anna-Lena Lamprecht.

Av: Medverkande: Materialtyp: TextSerie: Utgivningsuppgift: Berlin, Heidelberg : Springer Berlin Heidelberg : Imprint: Springer, 2013Utgåva: 1st ed. 2013Beskrivning: XXII, 223 p. 84 illus. online resourceInnehållstyp:
  • text
Medietyp:
  • computer
Bärartyp:
  • online resource
ISBN:
  • 9783642453892
Ämnen: DDK-klassifikation:
  • 005.1 23
Onlineresurser:
Innehåll:
The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.
Sammanfattning: The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.
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The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.

The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.

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